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Last updated 3 days ago
Single-cell parallel analysis of DNA damage and transcriptome reveals selective genome vulnerability
3 days ago
Nature Methods, Published online: 24 March 2025; doi:10.1038/s41592-025-02632-3This work presents an in...
Simultaneous single-cell DNA damage profiling and RNA sequencing by Paired-Damage-seq
3 days ago
Nature Methods, Published online: 24 March 2025; doi:10.1038/s41592-025-02634-1We developed Paired-Damage-seq to profile...
Connectivity of single neurons classifies cell subtypes in mouse brains
6 days ago
Nature Methods, Published online: 21 March 2025; doi:10.1038/s41592-025-02621-6This Resource presents a method...
Marrying mechanics with spatial transcriptomics
8 days ago
Nature Methods, Published online: 19 March 2025; doi:10.1038/s41592-024-02491-4A method infers tension from...
Comparing chromatin contact maps at scale: methods and insights
8 days ago
Nature Methods, Published online: 19 March 2025; doi:10.1038/s41592-025-02630-5This study presents a benchmarking...
A graph neural network that combines scRNA-seq and protein–protein interaction data
9 days ago
Nature Methods, Published online: 18 March 2025; doi:10.1038/s41592-025-02628-zWe introduce a dual-view graph...
A computational pipeline for spatial mechano-transcriptomics
10 days ago
Nature Methods, Published online: 17 March 2025; doi:10.1038/s41592-025-02618-1The authors present a computational...
Propensity score weighting
10 days ago
Nature Methods, Published online: 17 March 2025; doi:10.1038/s41592-025-02629-yThe needs of the many...
scNET: learning context-specific gene and cell embeddings by integrating single-cell gene expression data with protein–protein interactions
10 days ago
Nature Methods, Published online: 17 March 2025; doi:10.1038/s41592-025-02627-0scNET combines single-cell gene expression...
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage
14 days ago
Nature Methods, Published online: 13 March 2025; doi:10.1038/s41592-024-02563-5This Resource describes data, code...
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
14 days ago
Nature Methods, Published online: 13 March 2025; doi:10.1038/s41592-025-02623-4This analysis provides a collection...
Feature selection methods affect the performance of scRNA-seq data integration and querying
14 days ago
Nature Methods, Published online: 13 March 2025; doi:10.1038/s41592-025-02624-3This Registered Report presents a...